PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.UB339
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 455aa    MW: 51382.5 Da    PI: 5.0814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.UB339genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.3e-12246297155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  Aradu.UB339 246 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 297
                  79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.52E-12244301No hitNo description
Gene3DG3DSA:4.10.280.101.7E-13244300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428245296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16245312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9246297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9251302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MTFTTIRFES LLQAPMPPTP SFNTLDYSLD HNHHHHHLMQ FRQGESSGEH SNGIADYIPQ  60
QQQQLPPAPP PSCFYNANSS SFDKLSFADV MQFADFGPKL ALNQGKPCEE PGIDPVYFLK  120
FPVLNDKMDE HNIMMMNHES DGGGGREEVE TEAENNNDER FNNGEEEDAA MGGADQEDGR  180
MKGEEETARI SEDNNSVQIR FLGHGEDLVL NQKRNNNSSA LMQENNKNMK RKRPRTVKTS  240
EEVESQRMTH IAVERNRRKQ MNEHLRVLRS LMPGSYVQRG DQASIIGGAI EFVRELEQLL  300
QCLESQKRRR LLGEAQTRQV GDSNLGTQQQ QPLQPPFYPP LASPSEQMKL VELETGLREE  360
TAESKSCLAD VEVKLLGFDA MIKILSRRRP GQLIKTIAAL EDLQLIILHT NITTIEQTVL  420
YSFNVKVASE SRFTADDIAG SVQQIFSFIH ANTSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246257RMTHIAVERNRR
2306310KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150436e-70AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967557.10.0PREDICTED: transcription factor FAMA isoform X1
SwissprotQ56YJ81e-141FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A0L9UTH60.0A0A0L9UTH6_PHAAN; Uncharacterized protein
STRINGGLYMA01G23230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104893340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-128bHLH family protein